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assemblystatistics

A simple program for evaluate the assembly of a give genome.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

clusterviz

gene cluster visualization tool

dagflow

Module to create DAG Task and Manage Task on SGE

electrophoresisgel

grandflow

graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html

hifi-16s-workflow

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

interartic

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

lightm

Tool for deep analysis of macroscopic microbial movements

material-wecenter

WeCenter安卓客户端

microbetrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

pacbiofileformats

Specifications for PacBio® native file formats

pacbiotosra

Take a list of Pacbio files (.fofn) and creates a spreadsheet for data submission to the sequuence read archive (SRA)

plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

pmgap

Perform the assembly and annotation process of plasmids, mitochondria, plastids, and phages.

pycircos

python Circos

rnaseq_with_hisat2_stringtie

RNAseq analysis with Hisat2, stringtie, and ballgown

usher

Ultrafast Sample Placement on Existing Trees