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2017-10-longreads-training

2018-sms

Poster and talk presented at Bioinformatics for the Microbiome Symposium at Stanford on 2018-09-24

2brad_denovo

Genome-wide de novo genotyping with 2bRAD

3d-dna

3D de novo assembly (3D DNA) pipeline

3p-clr

able

ABLE - Approximate Blockwise Likelihood Estimation

acfs

A pipeline for de novo circRNA identification

admixtools

Tools test whether admixture occurred and more

admixture_graph

Module for analysing admixture graphs

agat

Another Gff Analysis Toolkit

akutils-v1.1.1

Mostly useful scripts and files for processing MiSeq amplicon data

akutils-v1.2

akutils with massive updates over v1.1 to functionality and command line interface.

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

all_dictionaries

宇宙最全在线词典网站导航

allhic

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

alpaca

A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.

ampseq-ssr

An accurate and efficient method for large-scale SSR genotyping and applications

angel

Robust Open Reading Frame prediction (ANGLE re-implementation)

annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript

annotation_methods

Methods for genome annotation using paired-end RNA-seq data

annotationliftover

A pipeline to liftover the gene structure of reference genome to other lines/accessions

arraytools

Misc information for BRB-ArrayTools users

assemblosis

CWL-based automated bioinformatics workflow for PacBio and Illumina data

assembly-stats

Assembly statistic visualisation

assembly-stats-1

Get assembly statistics from FASTA and FASTQ files

august-2019-consensus-accuracy-update

A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

axel

light command line download accelerator

axiome2

Automation, eXtension, and Integration of Microbial Ecology