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2p_utility_scripts

airsweep

Arduino scripts to control an air line connected to a servo

astrobee

NASA Astrobee Robot Software

axondeepseg

Axon/Myelin segmentation using Deep Learning

axonseg

Segment axon and myelin from microscopy data. Written in Matlab.

b-soid

Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

click

Simple MATLAB script to automate all components of Clack Whisker Tracker

deeplabcut

Markerless tracking of user-defined features with deep learning

deeplabcut-live

SDK for running DeepLabCut on a live video stream

dlc-inferencespeed-benchmark

A database of inference speed benchmark results on various platforms and architectures

dlcutils

Various scripts to support deeplabcut...

facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

fasciculation

is she wiggling

figure_scripts

imageio

Python library for reading and writing image data

lickometer

Arduino code for detecting licks/touches

mathomir_git

Initial

mesmerize

Platform for Calcium Imaging analysis

mouse

A trackball mouse. Mechanical files, PCBs, and firmware all included.

openspritzer

An open hardware pressure ejection system for reliably delivering picolitre volumes.

opto-script

patchwarp

Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.

paws

Automated pain scoring from paw withdrawal tracking data

sleap

A deep learning framework for multi-animal pose tracking.

suite2p

cell detection in calcium imaging recordings

v4

Arduino script to control whisker stimuli training w/ lick sensor

vajtay_bandi_2018

Dataset for figures of paper

whereyougo

android app for Wherigo

whisk

Fully automated tracking of single rows of whiskers in high-speed video.