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shishirbd4

Tushar Ahmed Shishir's Projects

30-days-of-python icon 30-days-of-python

30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos may help too: https://www.youtube.com/channel/UC7PNRuno1rzYPb1xLa4yktw

abricate icon abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

autovem icon autovem

Virus epidemic trends and key mutations analysis tool

awesome-crispr icon awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bacsort icon bacsort

a collection of scripts for organising bacterial genomes by species

bangladesh-geocode icon bangladesh-geocode

Division, District, Upazila and, Union level fully mapped Dataset in SQL, CSV, JSON, XML, and PHP format.

crisprcasfinder icon crisprcasfinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences

mlst icon mlst

:id: Scan contig files against PubMLST typing schemes

nullarbor icon nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

prokka icon prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

roary icon roary

Rapid large-scale prokaryote pan genome analysis

snippy icon snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

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