Davide's Projects
A bouncing REST CGI-proxy anonymizer in rails
Blender 3D for scientists course material
GFU pipelines configuration and reports. Progetto: 137 BPIPE and BPIPE_CONFIG: gfu pipelines
bpipe pipelines for GFU HSR Unit
bpipe workshop
Configuration files 2024
dndscv dockerfile
fastq2bcl convert fastq files in a bcl2fastq-able run directory.
flowFit: a Bioconductor package to estimate proliferation in cell-tracking dye studies
Repository to host tool-specific module files for the Nextflow DSL2 community!
An alternative Random library for Unity3d designed to generate uniform Pseudo-Random deviates. The library use a fast PRNG (Mersenne-Twister) to generate: Floating Number in range [0-1] and in range [n-m], Vector2 and Vector3 data types.
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
Code and files for the main nf-core website.
A go twitter bot
Processing Wise Node and Edges Drawer
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A single-cell RNAseq pipeline for 10X genomics data
A cytoscape web plugin implementation to explore mammospheres development
Generate artificial fastq sequences: single end, paired end, with indexes, with UMI and with barcodes
SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
Test data to be used for automated testing with the nf-core pipelines
Config files for my GitHub profile.
public configuration files
github website tucano
RANDOM NUMBERS IN UNITY C# scripting
Random library in C# for Unity3D
RNA velocity estimation in Python