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I have a PhD at the SEMM school (European School of Molceular Medicine) in Bioinformatics & Molecular Evolution.

I have a biological and medical background and more than ten years of experience in software development on unix and windows systems.

Programming languages and Frameworks:

  • Perl
  • R
  • javascript
  • java
  • ruby
  • RubyOnRails
  • C++
  • Unity3D
  • C#
  • golang

Davide's Projects

bpipe_config icon bpipe_config

GFU pipelines configuration and reports. Progetto: 137 BPIPE and BPIPE_CONFIG: gfu pipelines

fastq2bcl icon fastq2bcl

fastq2bcl convert fastq files in a bcl2fastq-able run directory.

flowfit icon flowfit

flowFit: a Bioconductor package to estimate proliferation in cell-tracking dye studies

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mtrandom icon mtrandom

An alternative Random library for Unity3d designed to generate uniform Pseudo-Random deviates. The library use a fast PRNG (Mersenne-Twister) to generate: Floating Number in range [0-1] and in range [n-m], Vector2 and Vector3 data types.

neopredpipe icon neopredpipe

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

nextneopi icon nextneopi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

nf-co.re icon nf-co.re

Code and files for the main nf-core website.

pwned icon pwned

Processing Wise Node and Edges Drawer

sarek icon sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

scrnaseq icon scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

simcellvisio icon simcellvisio

A cytoscape web plugin implementation to explore mammospheres development

simfastq icon simfastq

Generate artificial fastq sequences: single end, paired end, with indexes, with UMI and with barcodes

soprano icon soprano

SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

tucano icon tucano

Config files for my GitHub profile.

vimrc icon vimrc

The ultimate Vim configuration: vimrc

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