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evalsvcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers

flappie

Flip-flop basecaller for Oxford Nanopore reads

mako

A model-free method for structural variants discovery

mako_classifier

mulrocplayer

A tool to plot ROC curve in multi-class classification models.

nanosv

SV caller for nanopore data

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

scikit-geometry

Scientific Python Geometric Algorithms Library

special-skills-in-linux

To record some special but useful command format in linux

srcfind

A tool to detect relative regions in genomes and give a score

study-on-three-generation-sequencing-structure-variation-detection-algorithm-graduation-porject-

The relative files of ttbond's graduation project

sv-detection-with-ssl-from-jd