Comments (6)
tseemann
commented on May 26, 2024
Ok, there is a now a PRODUCT column.
Only some DBs and some genes have a product though.
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schultzm
commented on May 26, 2024
lightning-fast update. thanks!
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nalbright
commented on May 26, 2024
Where in the fasta header does the product information need to be. I have tried running a database with headers having a space and description (as per instructions for custom DB), but it does not display "product" in the output .csv. Is there a flag that I am missing? or do I have that information in the wrong spot in the fasta header?
Thanks!
Nicolette
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tseemann
commented on May 26, 2024
@nalbright can you paste the first line of your database sequences file?
and also what does abricate --version say?
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nalbright
commented on May 26, 2024
I am running abricate through biocontainer --version: abricate 0.5-dev
Header:
S_epidermidis_ISOLATEDB~~~NP_763556.1~~~OINGLKLB_00795 chromosome replication initiator DnaA; 1056816
Thanks!
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tseemann
commented on May 26, 2024
@nalbright your version of Abricate is too old. Support for PRODUCT came after 0.5.
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