Comments (3)
Hi
I am actually getting the exact same problem as above!
I am running the command using a singularity container.
singularity exec $base_path/singularity_containers/abricate_1.0.1--ha8f3691_2.sif makeblastdb -in sequences -title PLSDB -dbtype nucl -hash_index
The command runs fine but I am unable to see a new entry in abricate --list and hence cannot use this database.
Appreciate your assistance,
regards,
Nandan
Note: Abricate works great for me with the default databases. thanks.
from abricate.
I believe the issue arises from the directory in which Abricate stores all the databases. In my case, it's my current directory, which was causing the problem. Upon installing Abricate via conda, I could observe my new database listed in the Abricate database.
from abricate.
Should you check the directory of miniconda3?. In my case, the abricate --list will list db in this folder: /lustre7/home/buihoangphuc412/miniconda3/db. Not from abricate database.
from abricate.
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