Trinity RNA-Seq de novo transcriptome assembly see the Trinity wiki
We encourage you to contribute to Trinity! Please check out the Contributing for the guidelines.
trinityrnaseq Goto Github PK
Type: Organization
trinityrnaseq's Projects
bamsifter
normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
berlintrinityworkshop2017
workshop in Berlin, mid-June 2017
berlintrinityworkshop2018
week-long Trinity workshop in Berlin, June 2018
bernworkshop2016
workshop in Bern, Switzerland in Oct 2016
bernworkshop2018
Workshop in Bern, Switzerland in June, 2018
bicg_2018
bicg_2019
Workshop content for Bioinformatics for Cancer Genomics workshop 2019
butterfly
Butterfly codebase
chrysalis
Chrysalis codebase
cshladvseqtech
basic rna-seq tutorial, leveraging Trinity, StringTie, HISAT2, and IGV
cshlprogforbio
cshlprogforbiol2017
rna-seq materials for the CSHL programming for biology series 2017
cshlprogforbiol2018
CSHL Prog for Bio 2018, trinity rnaseq section
cshlprogforbiol2019
CSHL Prog for Bio course 2019, rna-seq section
embotrinityworkshopsept2016
rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
galaxytrinityprotocol
Running the Trinity protocol via a Galaxy web interface.
griffithlab_rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
griffithlab_rnaseq_tutorial_wiki
The wiki repo, with pull request enabled, for the rnaseq_tutorial
inchworm
Inchworm codebase
keepsakes
milestones and momentos
krumlovtrinityworkshopjan2016
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
krumlovtrinityworkshopjan2017
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2017
krumlovtrinityworkshopjan2018
Trinity RNA-Seq workshop in Krumlov 2018
krumlovtrinityworkshopjan2019
Trinity workshop in Krumlov, Jan 2019
krumlovtrinityworkshopjan2020
Trinity rnaseq workshop in Cesky Krumlov, Czech Republic, Jan 2020
krumlovtrinityworkshopmay2022
Krumlov Trinity Workshop, May 2022
krumlovtrinityworkshopmay2023
The first edition of the abridged version of the workshop
minigenome
makes a mini-genome, shrinks introns, useful for developing small test sets and small data sets for workshops
misc_tests
naplesworkshop2016
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