transmart Goto Github PK

blend4j-plugin

blend4j-plugin is a grails plugin to access galaxy.

dalliance-plugin

folder-management-plugin

The transmart (and grails) plugin that contains the folder-management elements.

gwava

Genome Wide Association Study Visualizer (from Pfizer)

i2b2_1.6_postgres

ipaapi

mydas

mydas is an easy-to-extend Java DAS server framework.

rinterface

A R module with packaged functions to query the tranSMART database directly

rmodules

A R statistical analysis module plugin for tranSMART

scripts

A collection of scripts for managing all the tranSMART Foundation repositories

smartr

SmartR

transmart-base-ui

Boilerplate code for tranSMART UI

transmart-batch

tranSMART pipeline alternative to ETL, using Spring Batch

transmart-core-api

constraints

transmart-core-db

TranSMART Core

transmart-data

Tools for managing tranSMART's database

transmart-docs

transmart-etl

tranSMART ETL pipelines and configurations

transmart-extensions

Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!

transmart-gwas-plink

Plink integration for tranSMART

transmart-gwas-plugin

The transmart (and grails) plugin that contains the GWAS elements.

transmart-horde

This contains code for a prototype of "federation"

transmart-i2b2-plugin

transmart-ice

ICE tool for transmart ETL (formerly FCL4tranSMART)

transmart-legacy-db

Contains the Grails domain declarations of the legacy transmart schema

transmart-metacore-plugin

The tranSMART plugin Metacore

transmart-mydas

transmart-rest-api

HTTP available tranSMART RESTful API

transmart-test

Functional tests for tranSMART

transmart-travis

Helper scripts for travis builds