Comments (6)
Same for "Sertraline Tablets"
But "Sertraline" map to PUBCHEM.COMPOUND:68617
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Thanks for the report. Spot checking, I'd say we're currently pretty weak on brand names for drugs overall. The only one I found was lipitor. It doesn't seem that the sapbert that we're playing with does very well either (though it does handle the "sertraline tablets" query fine).
from nameresolution.
RxNorm has a lot of brand names, so once we've added that to Babel (TranslatorSRI/Babel#150) that will hopefully mostly solve this problem.
from nameresolution.
@Genomewide I remember you mentioning that you had a list of the top-selling drugs in the US for use in autocomplete checking -- I'd love to use that list to test this issue. Could you please send me that list or add it to this issue?
from nameresolution.
The list of top-selling drugs @Genomewide mentioned is https://www.drugdiscoverytrends.com/50-of-2022s-best-selling-pharmaceuticals/. I'll add these to the Babel validator and report back on where we currently are with this.
from nameresolution.
We support most of the top 50 best selling US drugs now. The missing ones:
- Paxlovid (CHEBI:192712)
- Spikevax (RXCUI:2601552)
- Biktarvy (RXCUI:1999667)
- Trikafta (Kaftrio, PUBCHEM.COMPOUND:165363555)
- Gardasil (RXCUI:659877)
- Prevnar (MESH:D022242)
- Botox (MESH:C542869)
- Entresto (CHEBI:9927)
- Januvia (CHEBI:40237)
- Xeplion (PUBCHEM.COMPOUND:115237)
- Symbicort (PUBCHEM.COMPOUND:5281004)
Some of that might be because we're filtering for SmallMolecule, but it's most likely either because we don't have the correct synonyms.
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Related Issues (20)
- Duplicated results
- Rat v rats
- Rename to Name Resolver to be consistent
- Error on reverse lookup for PUBCHEM.COMPOUND:107526
- Searching for nothing actually searches for "OR"
- Figure out some way to document the dataUrl being used for a NameLookup instance
- Update NameLookup Jupyter Notebook and write some Translator-specific documentation
- We don't do a good job on depression
- Rename `/reverse_lookup?curies=X` to `/synonyms?preferred_curie=X`
- How do you get synonyms JSON file from the download TSV files? HOT 2
- Add LICENSE to NameRes HOT 1
- Lookup for "diabetes type ..." takes more than a minute, and gives a wrong result HOT 1
- Can we incorporate hierarchy information somehow?
- "Bone" works well when autocomplete=true but breaks when autocomplete=false
- Figure out how to reduce boosts on repeated terms
- Brand Names? ®
- Hyphen processing still a bit dodgy, possibly because of our choice of tokenizer
- Upgrade Solr to 9.5
- Searching for BRCA1 in autocomplete=true mode gives a lot of bad matches
- Ideal memory requirement for NameRes on Translator HOT 1
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