Comments (1)
torognes
commented on August 19, 2024
I've added a new column containing the maximum radius, this time computed as the sum of the differences from the initial seed to subseed ... to subseed to an edge. This value should be less or equal to the generation number multipled by /d/. I am not sure, but it may possibly be larger than the number of differences directly from the initial seed to the edge.
from swarm.
Related Issues (20)
- Incorrect results with long sequences, very high gap penalties, and d>1 HOT 9
- Roadmap HOT 9
- table formats for making OTU table from swarm results HOT 2
- documentation: maximal input sequence length HOT 9
- Link to new swarm 3 paper HOT 3
- way too many clusters? HOT 7
- Issues with plotting: OTU not found HOT 3
- OTU table without abundance values HOT 6
- Compiling fails on Windows HOT 3
- maximal header length HOT 1
- uc file question HOT 7
- Invalid numeric argument for option -t or --threads HOT 8
- integer division might be one byte too small in some cases HOT 14
- Seeds not in same order as clusters in output files HOT 2
- Option to exclude seeds or clusters with low abundance HOT 1
- risk of silent 8-bit unsigned integer overflow in score matrix HOT 5
- fastidious boundary applies to the consolidated cluster mass? HOT 1
- Option to output cluster member ids/sequence id? HOT 3
- swarm terminates if any sequence in the input fasta file has an N HOT 2
- Refactor Bloom filter code
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from swarm.