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Name: Thomas Fisher-York
Type: User
Company: Boyce Thompson Institute
Location: Ithaca, NY
Name: Thomas Fisher-York
Type: User
Company: Boyce Thompson Institute
Location: Ithaca, NY
Align 2 alignments (with identical sets of sequences) using Needleman-Wunsch. Column-column score is number of identical non-gap residues.
Langton's ant with various generalizations. (java script)
Scripts for studying collatz problem and some generalizations.
Simulate genotypes with various relationships (parent-child, full sibling, 1st cousing, unrelated, ...) ... To study strategies for identifying close relatives in a large set of genotypes.
Classes implementing a graph, and nodes representing genotypes to (hopefully) allow efficiently searching for the genotype in the graph which is most similar to another genotype.
my go (go lang) code
go language implementation of search for similar genotype sequences.
Histogramming data and plotting resulting histograms.
Kenken where the player defines the cages and the operations in each.
javascript for interactive 'factor square' puzzle.
perl modules and scripts for running mrbayes and analyzing output.
MCMC and MCMCMC. Space is [0..N]^d , proposals are symmetric.
Simulation run output from mcmc_toy.
This is my version of Ane's 'mdl' a program to partition a long alignment into a set of shorter 'groups' according to the criterion of Minimum Description Length (MDL).
A version of MrBayes (starting from 3.2.4) with some features added by me.
Perl modules and scripts to analyze gene families and find orthologs by aligning, constructing trees, rooting them by mindl wrt a given species tree, and identifying speciation nodes of tree.
Various svg files with e.g. puzzle shapes to make with pentiamonds and tetrahexes.
test correctness of parents specified in pedigree by comparing genotypes.
perl code for constructing histograms and classifiers using mcmc techniques.
Perl modules to generate randomized math problems of various types. The idea is that each module generates problems of a certain type, but with the specific numbers involved chosen randomly. So that every student an be given a set of problems different from everyone else's, to avoid the problem of some students copying other students' answers.
The code behind the Sol Genomics Network main website
C code to find similar genotype sets.
Perl script(s?) to string-art style drawings.
Perl modules and scripts for generating svg for various patterns (e.g. honeycomb)
just for practice
simulate alignments from a tree and reconstruct with raxml to study how well can reconstruct.
Tree_reconstruction_studies
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.