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185_project_code

amigo

Amigo 2 API Wrapper

anarci

Antibody Numbering and Antigen Receptor ClassIfication

anonymize-dicom

Wish to share your dicom files to collaborators, but you don't want to break HIPA? Well this is the tool for you! This will create a copy of a folder and strip and HIPA related meta data from the dicom files!

ant

Ambiguous Nucleotide Tool (ANT), software for generating and evaluating degenerate codons for natural and expanded genetic codes.

augpathlib

Augmented pathlib. Everything else you could do with a path.

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yours!

bikotbi.io

This site contains code, tools and resources for the construction and maintenance of the Brain Injury Knowledge Ontology (BIKO) for traumatic brain injury (TBI).

bioportal-api

API Wrapper for BioPortal's rest API

biopython

Official git repository for Biopython (originally converted from CVS)

circlator

A tool to circularize genome assemblies

codonlib

Codon Degeneracy

coffee-src

USDA's coffee import and export website skeleton.

cs503-project

Project assignment for CS503 Scientific Databases **cough glorified mysql course** where we make a interactive mysql database using flask for the front end.

cudamm

Matrix multiplication analysis with CUDA

deepvcf

Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

docxparser

Parsing docx files with python-docx and pandoc

fastmri-1

A large-scale dataset of both raw MRI measurements and clinical MRI images

flask-ghpages-example

An example of how you can deploy a static Flask app on Github pages

genscript

FARM stack (FastAPI, Retool, MongoDB) for the Protein Production Pipeline by connecting P4 to P3

globus-timer-cli

CLI for interacting with the Timer API

gracie

Geek Stuff

grayscale

Using PyCuda to convert RGB to GrayScale

gs-tools

Google Sheet general tools using gspread

h5ad-tutorial

Some h5ad single cell file parsing work to help with future projects

imagetocsv

Converts an image to a CSV. This exists because Chorus 3.0 is bat-shit and only show images for vital metadata.

interlex-bulk-ingestion

Ingest entities from a CSV or Google Sheet and get the same mode of input back with additional columns added to know how it went.

main_work_file

General place to put what I'm working on

myprojects

nif-ontology

NIF Standard Ontologies (NIFSTD)