tleonardi Goto Github PK

.dotfiles

altamisa

Alternative Python API for accessing ISA-tab files

bedparse

Python module and CLI tool to perform operations on BED files

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

Tools for bioinformatics

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

debtap

A script for converting .deb packages into Arch Linux packages, focused on accuracy

enrichment_strategies_course

Course on enrichment strategies for the EMBL bioinformatics wokshop

ggheatmap

Generate pretty ggplot2 heatmaps with row and column dendrograms

image_analysis_in_r

Tutorial on Image analysis using R

intim

Interactively interface Vim with interpreters

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

nanocompore_paper_analyses

Analyses performed for the nanocompore paper

nanocompore_pipeline

Nextflow pipeline for nanocompore analysis

nanopolishcomp

Python package for upstream preprocessing and downstream analysis of nanopolish

notmuch-addrlookup-c

Address lookup tool for Notmuch in C using GLib and libnotmuch

orf_annotate

pinfish

Tools to annotate genomes using long read transcriptomics data

poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

pubmed_parser

:clipboard: A Python Parser for Pubmed Open-Access XML Subset and MEDLINE XML Dataset

pycoqc_pipeline

Nextflow pipeline that runs pycoQC on Guppy output

rmd2html

Workflow that converts Rmd files in a nicely formatted html page using twitter bootstrap

scripts

Various scripts that make my everyday life easier

selenium-maven-plugin

sequenceimp

Small RNA analysis pipeline

simple-java-maven-app

For an introductory tutorial on how to use Jenkins to build a simple Java application with Maven.

singularity

Repository with my singularity recipes hosted at Singularity Hub

spaghettieastern

Spaghetti Eastern website

superstruct

A simple and composable way to validate data in Javascript.

taprnas

Pipeline for the identification of Topological Anchor Point RNAs (tapRNAs)