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Renmao Tian's Projects

asap2 icon asap2

Automatically analyze prokaryotic 16S rRNA gene amplicon sequencing data using QIIME 2 and other tools.

ml_tree_wrapper icon ml_tree_wrapper

This program does alignment of protein or DNA sequences using muscle, trim the alignment using Gblock, and reconstruct ML phylogenetic trees using RAxML or FastTree.

plasmidhunter icon plasmidhunter

This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.

vbcg icon vbcg

VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution

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