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awesome-nodejs-streams

Awesome resources and modules for Streams in Node

bionode-watermill

💧Watermill: A Streaming Workflow Engine

bita

bita.py allows to blast mixed queries of proteins (tblastn) and nucleotides (blastn) against a custom nucleotide database or databases.

blast_wrapper

docker-imgs-tests

A repo to test docker image builds

docker-watermill-tutorial

This is a dockerfile for bionode-watermill-tutorial

docker_patlas

this is an experimental docker image for patlas

electron_tests

This is a sandbox for experimenting with electron

fasta_breaker

A quick and dirty way to separate huge fasta file into many fastas with 1000 sequences.

gb_downloader

A script to download .gb files using ncbi eutils from GI present in fasta

gbcds2fasta

This script retrieves CDS data from .gb files to a fasta in which each CDS is a sequence entry

gsoc17

GSoC Project: Streaming Workflow Engine

mash_wrapper

This script runs MASH given a set of reads against specified references.

mashix

This script runs MASH, making a parwise comparisons between sequences in input (fasta) file(s).

node_animation

This is a test repo for a node animation

patlas

Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:

patlas-db-creation

This repository is a test wrapper for the creation

patlasflow

A pipeline to run mapping, mash screen and assembly methods for pATLAS.

patlaspresentation

Presentation for patlas in reveal.js

phd_scripts

This is a collection of begginer scripts used during my PhD thesis.

plasmidcoverage

Script to obtain plasmid id from WGS data using bowtie2 to map

plasmidpredictor

Predict plasmids from uncorrected long read data

presentations

This is a repo for stashing presentations

spammer-wdl

trimer

wdl-tests