Thomas Yu's Projects
Project for automating AMI deployments to a Sage AMI repository
AMP-AD Metadata Dictionary
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
Global Sage Bionetworks AWS Infrastructure
A .bash_profile for your convenience.
Supplementary files for my book, "Bioinformatics Data Skills"
Repository for CWL Specifications
Data coordination resources for the NCI CSBC and PS-ON consortia
The most efficient visual data annotation tool
A D3.js-based heatmap htmlwidget for R
Interactive web-based genome browser.
Code designed to annotate and process CTF-funded dermal NF samples. All available data and key analysis steps uploaded to http://www.synapse.org/dermalNF
Base and example Docker images for the Digital Mammography DREAM Challenge
This is an example of a DM Challenge submission in Python.
A template project for setting up a containerized CWL Tool.
Some starter code for training/testing some basic CNN models given our data.
Code sharing related to DREAM challenges
Analysis code (R, Python, SQL...) to assist with users interacting with the GENIE public data.
CDK-based deployment infrastructure for Genie-BPC application
Learning Go