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Name: Thomas Hitch
Type: User
Company: RWTH Aachen
Bio: Postdoc at RWTH Aachen, Uniklinik Areas of interest; Metagenomics, Bioinformatics, Genome assembly, Microbial ecology
Name: Thomas Hitch
Type: User
Company: RWTH Aachen
Bio: Postdoc at RWTH Aachen, Uniklinik Areas of interest; Metagenomics, Bioinformatics, Genome assembly, Microbial ecology
Provides some of the common assembly statistics used to identify how good a metagenomic assembly is.
Some useful python scripts for biologists
Consort: amplicon sequence variant based analysis of 16S rRNA datasets from minimal consortia
ConsortM: MALDI-based consortia monitoring
This script searches for hyperlink text in the layout, and converts it to QuarkXPress hyperlinks
This is an adaptation of https://github.com/prestevez/dna2proteins which outputs all protein sequences instead of the best one. I take no credit for writing the code or responsibility if it doesnt work.
Uses GFF files to identify regions of interest within a sequence file and produce a separate file of only these extracted regions.
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
A manually curated database of human gut metabolic modules.
Annotation of the microbial lipases within the mammalian gut
Repository of the integrated mouse gut metagenomic catalog
Integrative Viral Ontology Network
If BLAST fails this can identify the last completed match and provide the unfinished fasta file for completion.
A proposed update for the classification and description of bacterial lipolytic enzymes
Files and scripts required to re-run the analysis described in the paper 'The BLAST and the spurious: Biases in genomic data propagate from heurstic local sequence alignment algorithms'.
A repository to generate minimal microbial consorita
Minimal Microbial Consortia creation tools
A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
A repository of prokaryote descriptions, along with associated metadata, linked to GTDB.
Tool to easily install QIIME's dependencies on Linux systems
REconstruction Of Novel culturable species
Gives each sequence in a FASTA file a unique name
Analysis of the rumen mycoviral population
Calculates Shannon diversity index value for a dictionary of values
Spherical is an iterative approach to large metagenome assemblies, designed for clusters where insufficient RAM is available for a straightforward assembly.
Splits fasta file
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.