Comments (3)
michalk8
commented on June 8, 2024
Hey @MoritzTh ,
that's strange. I suspect the progress bar may be somehow stuck because of some strange race condition. I'd try to specify n_jobs=1 to sequential processing or try backend='threading' in cr.pl.gene_trends.
Hope this helps. If not, I will add an option to disable the progress bar altogether, since I think the issue lies there.
from cellrank.
MoritzTh
commented on June 8, 2024
That works, thanks!
from cellrank.
michalk8
commented on June 8, 2024
Glad it worked!
from cellrank.
Related Issues (20)
- estimators.GPCCA.plot_macrostates() gives error for legend plotting HOT 7
- AttributeError: 'GPCCA' object has no attribute 'compute_fate_probabilities' HOT 2
- vk has no attribute plot_projection? HOT 7
- vk.plot_projection(): KeyError: "Unable to find a basis in `adata.obsm['X_umap']` or `adata.obsm['umap']`." HOT 2
- Estimating Fate Probabilities and Driver Genes----Uncover driver genes: RuntimeError: No stationary distribution found in `.eigendecomposition['stationary_dist']`. HOT 4
- AttributeError: 'NoneType' object has no attribute 'compute_transition_matrix' HOT 5
- Identify states -> I get ValueError: Sparse implementation is only available for `method='krylov'`. HOT 3
- How to delete gridlines in figures HOT 2
- Request for Intestinal organoid dataset(scEU-seq) HOT 3
- Setting of vk.plot_projection() HOT 2
- ValueError: setting an array element with a sequence HOT 4
- P-value for cellrank.pl.log_odds HOT 2
- Tolerance not exposed HOT 1
- Real Schur Decomposition High Values HOT 2
- Saving figures generated by ScVelo and CellRank HOT 9
- Remove L2 penalty from pygam models HOT 1
- Heatmap expression cascade enriched for genes peaking in most terminal state of the lineage HOT 7
- Fix `pandas>=2.1.1` HOT 1
- Using Seurat SNN graph in place of connectivities matrix HOT 2
- A question about cr.pl.gene_trends() of cellrank HOT 17
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cellrank.