theinnuendoproject Goto Github PK

chewbbaca

BSR-Based Allele Calling Algorithm

chewbbaca_schemas

wgMLST schemas formatted for chewBBACA for food-borne pathogens

flowcraft_innuendo

A Nextflow pipeline assembler for genomics :whale::package:

getseqena

Get fastq files from ENA using Run IDs

ibm2018

Introduction to bioinformatics for microbiologists (Uni Helsinki)

innuca

INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

innuendo

innuendo_docker

Docker-compose for INNUENDO Platform deployment

innuendo_process_controller

INNUENDO Process controller source code wiht integration with Nextflow

innuendo_rest_api

Frontend application and REST API for the INNUENDO Platform

linuxcourse

Problem-solving based course for Linux

microbialgenomemetagenomecourse

Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017

nawc

R scripts for performing analysis of cluster stability of cgMLST allele profile database using the Neighbourhood Adjusted Wallace Coefficient (nAWC)

patho_typing

In silico pathogenic typing directly from raw Illumina reads

rematch

Reads mapping against target sequences, checking mapping and consensus sequences production

seq_typing

Determine which reference sequence is more likely to be present in a given sample