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ali

Command-line interface to some basic Biopython alignment manipulation functions.

bacter

Bacterial phylogenetics in BEAST 2.

bang

Bang! Adding Turing Completeness to your config files since 2020.

bayesianmcmclectures

Lectures I gave for a Bayesian statistics minicourse at the University of Hohenheim.

bdmm

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

bdmm-prime

Modified implementation of the BDMM multi-type birth-death model for BEAST 2.

beast.m4

Some basic m4 macros for BEAST 2 XMLs

beast2

Bayesian Evolutionary Analysis by Sampling Trees

beastfx

GUIs for BEAST using Java FX to make things more pretty.

beastpackagerepository

Experimental Django-powered BEAST 2 package repository

bioinf702_lectures

Lecture slides for bioinf702

biozentrumtalk

bsloader

Easily load R scripts provided by BEAST 2 packages.

buildroster

Employee roster generator.

carlo-tim-sampling-study

ceskykrumlov2018_lectures

Talks presented at the 2018 Workshop on Population and Speciation Genomics, Cesky Krumlov

convsim

Simulation of ARGs under coalescent with gene conversion

dinofish

directtree

dvtm

Fork of dvtm (http://www.brain-dump.org/projects/dvtm) that provides simple runtime configuration of key bindings and other basic options via an ini-like config file.

epictree

epiinf

BEAST 2 package for performing inference on epidemiological parameters using the exact likelihood.

feast

Tasty additions to BEAST 2

figtree

Automatically exported from code.google.com/p/figtree

h5shell

Command shell interface for HDF5 scientific data files.

hamiltoniantreedynamics

Rough visualisation of classical mechanics in tree space

hk_2018_miniproject

Instructions and data for student mini-project at the 2018 C3BI course on molecular phylogenetics.

hk_2018_slides

Lecture for C3BI workshop in HK, 2018

icylog

Browser-based BEAST log file analyzer.

icyseq

An extremely simple browser-based multiple sequence alignment viewer.