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centrifuge

Classifier for metagenomic sequences

cichlid-grns

Gene regulatory network reconstruction of five cichlid species (M. zebra, P. nyererei, A. burtoni, N. brichardi and O. niloticus)

ckan-frictionlessdata

ckanext-copo-schema

Custom metadata for EI CKAN

conan

Conan2 lightweight workflow manager

copo-documentation

COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.

copo-production

COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.

copo-sample-audit

to monitor the copo sample changes

course_embo_at_tgac_ppi_sep2015

Program and some material for EMBO Practical Course on computational analysis of protein-protein interactions: From sequences to networks, taking place at TGAC, Norwich, UK, Sep-Oct 2015

cropsight-api

REST api for CropSight

data_policy

Earlham Institute's current data management and security policies

earlham-galaxytools

Galaxy tools and workflows developed at the Earlham Institute

edp

mainline production repository for EDP

eicore

Home repo for EICore metadata for single cell work

eisca

A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

ei_scrnaseq_course

Materials for the single-cell RNA Seq course held at EI

fluxion-tools

Fluxion Tools

genefamilies_ui

A simple UI to explore gene families

grassroots-api

The Grassroots API - lightweight infrastructure for data federation, analysis and search

grassroots-brapi-module

A wrapper for the Grassroots DFW Field Trial Service to give a BrAPI interface

grassroots-build-tools

Scripts to manage the building of the different Grassroots infrastructure components

grassroots-client-frictionless-data

A tool to extract the resources from a Grassroots Frictionless Data Package

grassroots-client-java

grassroots-client-qt-desktop

The desktop Grassroots client application for running services on Grassroots servers

grassroots-client-web-core

Web client core module

grassroots-client-web-elasticsearch-ingest

grassroots-client-web-field-pathogenomics

Grassroots yellow rust map web client

grassroots-client-web-irods-metadata

Use with Eirods-dav to add metadata

grassroots-core

The core libraries of the Grassroots infratructure

grassroots-doc

A repository to bring together all of the multiple repositories that the grassroots docs are built from so that they can be built and hosted on readthedocs.org