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atac-seq-pipeline

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bert

TensorFlow code and pre-trained models for BERT

biosv

Breakpoint-based identification of Structural Variation

cbioportal

cBioPortal for Cancer Genomics

cheatsheets

RStudio Cheat Sheets

chip-seq-pipeline

A pipeline of ChIP-Seq raw data processing and downstream analysis

circrna_detection_review

countfasta.pl

A useful script by Joseph Fass and Brad Sickler at UC Davis for calculating total sequence length and other assembly metrics

coursera-ml-andrewng-notes

吴恩达老师的机器学习课程个人笔记

cxplain

Causal Explanations (CXPlain) is a method for explaining the predictions of any machine-learning model.

devnet

The DevNet project on github stores the PacBio DevNet website.

dge_workshop

gdcrnatools

GDCRNATools - An R package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC

git-tips

:trollface:Git的奇技淫巧

heatmaply

Interactive Heat Maps for R Using plotly

hlpid

HLPID Human lncRNA-protein interaction database (HLPID) aims to provide the genome-wide lncRNA-protein interactions and other related information about lncRNAs including single nucleotide polymorphisms (SNPs), mutations, and expression profiles.

htmlcssjs

Different kinds of templetes

kashgari

Kashgari is a Production-ready NLP Transfer learning framework for text-labeling and text-classification, includes Word2Vec, BERT, and GPT2 Language Embedding.

knife

Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms

machinelearning

Basic Machine Learning and Deep Learning

machinelearning-1

Machine Learning in Action（机器学习实战）

machinelearning_python

机器学习算法python实现

nb_deeplearning

Codes and data used in Neuroblastoma Deeplearning project

nlp_project

NLP project code

population_analysis

Loss gene analysis across different races

rlistings

Value formatting and ASCII rendering infrastructure for tables and listings.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rsem_tutorial

A short tutorial on how to use RSEM

sasr

sasr