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antibody-2019

atomium

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

bayesian-regression

Matlab implementations of various regression methods

c-patternsearch

C utilities and optimization algorithms

cell-circuit-framework

dream-tfbs-prediction-challenge-conference-round

dsprites-dataset

Dataset to assess the disentanglement properties of unsupervised learning methods

ets-analysis-scripts

flashcards

harness

haskell-syntax.vim

Haskell syntax file for VIM

intro-dl-cryoem-2019

java-crossplatform-utility

jprobe

julia-regression

keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.

lrpage

Java LR(1) Parser Generator which outputs parsers as Java source code

makefile-base

maximum-longevity

Modelling of longevity data from the International Database on Longevity (http://www.supercentenarians.org/)

mess

MESS (Motif Enrichment in Sequence Sets) is a tool for finding enrichment of sequence motifs in sets of sequences using a GSEA based method.

ml-cpp

Machine learning package implemented in C++. Built on the Eigen linear algebra library.

pbm-analysis

programming-language

prose

Multi-task and masked language model-based protein sequence embedding models.

protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

pwm-benchmarking

Benchmarking position weight matrix implementations in C

rnn

Recurrent neural network library

seq-svm

slurm-gcp

Slurm on Google Cloud Platform

spatial-vae

Source code for "Explicitly disentangling image content from translation and rotation with spatial-VAE" - NeurIPS 2019