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About Me

I am a PhD student studying human population genetics at the Department of Integrative Biology, University of Wisconsin-Madison.

Rank Programming Languages
1 Python
2 R

Ayken Askapuli's Projects

adnaxrefpanel icon adnaxrefpanel

A pipeline to merge ancient DNA sequencing data with modern genotyping data

ancient_mtdna_pipeline icon ancient_mtdna_pipeline

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

base_changer icon base_changer

Changes bases in a fasta file at user specified positions

eager icon eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

human_genomics_pipeline icon human_genomics_pipeline

A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

neo- icon neo-

An attempt to learn new knowledge

phylogenetics-class icon phylogenetics-class

A course in the theory and practice of phylogenetic inference from DNA sequence data

psrelip icon psrelip

An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data

tkgwv2 icon tkgwv2

An ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data

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