taoyang-dev Goto Github PK
Name: Tao Yang
Type: User
Bio: Bioinformatics and Statistician working in Pharma R&D.
Tao Yang's Projects
adroit
Accurate and robust method to infer complex transcriptome composition
chip-seq-qc-pipeline
perform intersecting, peak calling, run IDR, compute QC metrics
deeprimer
A Python library to predict the performance of designed primer sets for amplicon sequencing; implements tensorflow and sklearn; performs K-mer sequence analysis, motif discovery, local alignment
gidr
Generalized irreproducbile discover rate
hi-c-analysis-pipeline
perform alignment, quality control, generating Hi-C intra-chromosome matrix, normalization, calling Hi-C peaks, hierarchical clustering between cell lineages
hicrep
R package to evaluate the reproducibility of Hi-C data
motif-analysis-pipeline
de novo motif discovery and motif scanning in batch
mtdr
R package to comprehensively evaluate the reproducibility of chromatin profiling sequencing data
omics-integrative-analysis
integrative multi-omics (i.e., mRNA, miRNA, methylation) analysis of TCGA Glioma data; implements gene co-expression network
straw
Extract data quickly from Juicebox via straw
tdr
Tail dependence as reproducibility measure
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