tanyongjun0815 Goto Github PK

at_enhancer

bulkseq

Supporting material for book chapter 'Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq)'

deepsilencer

A deep convolutional neural network for the accurate prediction of silencers

deepstarr

Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells

four-rice-gap-free-genome

ggcor

only for researchers in china, authorized by houyunhuang

hic_tools

A collection of tools for Hi-C data analysis

matchedfilter

Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

ml_fromljpzzz

My blogs and code for machine learning. http://cnblogs.com/pinard

motif-clustering

Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

mvp

A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

my_rscripts

my_Rscripts

ncbitax2lin

Convert NCBI taxonomy dump into lineages

nifmap

NifH MiSeq Illumina amplicon Analysis Pipeline

org.osativa.eg.db

phenotype_analysis-pipeline

qtn_scripts

ricenavi

synthetic-promoter-designs-enabled-by-a-comprehensive-analysis-of-plant-core-promoters

taxadiva

TAXonomy Assignment and DIVersity Assessment - wrapper script for facilitating analysis of nifH amplicon sequences

variant_starrseq

Scripts to reproduce the results of the random variant and oligo STARR-seq paper

vavilovian_mimicry

xpclr

Code to compute the XP-CLR statistic to infer natural selection