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Name: Tanya Phung
Type: User
Bio: Bioinformatic scientist. PhD in Bioinformatics from UCLA (2018). BS in Biology from MIT (2014).
Name: Tanya Phung
Type: User
Bio: Bioinformatic scientist. PhD in Bioinformatics from UCLA (2018). BS in Biology from MIT (2014).
This repository contains scripts related to the empirical analyses of 1000 Genome dataset associated with Beichman et al. (2017) (https://www.ncbi.nlm.nih.gov/pubmed/28893846)
This repo contains cheat sheets for a variety of programs I use frequently
This repo hosts scripts that I use regularly
This repo reports the analysis comparing TPM and ASEReadCounter counts for between results from GTEX version 8 and results from remapping to sex-specific reference
Notes on GATK4
This repository contains scripts associated with the manuscript titled "Inferring the genetic architecture and extent of negative selection of human complex traits" (in prep)
How to plot with ggplot2 in R
This repo contains scripts to infer whether the process of recombination is mutagnenic.
Prioritize neoantigens based on MHC binding affinity, MHC stability, and tumor abundance
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
This repository contains scripts related to analyzing genetic diversity in the pseudoautosomal regions and non-pseudoautosmal regions of the X chromosome in canines (Phung et al.) (in preparation)
This repo contains scripts for parsing gtex data
Useful programs and scripts in bioinformatics and population genetics
This repository contains scripts that are often used in population genetics analyses (generating the site frequency spectrum or calculating genetic diversity)
This repo documents what I am learning about how to process RNAseq data
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
This repo contains scripts relating to analysis of RNAseq data
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
This repository contains scripts relating to analyzing vcf files
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.