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3dprintfromfreesurfer

3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

adcortsig-roi

Alzheimer disease cortical signature ROIs and cortical signature thickness measure calculation

antsrnet

Medical image analysis framework merging ANTsR and deep learning

brain_age_prediction

Neuroimaging based brain age prediction using 3D Dense-net

brainage

calculator

Source Code for Calculator App project of the Python Project-based Learning for Beginners Playlist

dcm2bids

Convert DICOM images to BIDS

deepbrainnet

Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanning different studies, scanners, ages, ethnicities and geographic locations around the world.

dti_preproc

preprocessing scripts for diffusion imaging

fernet

Freewater EstimatoR using iNtErpolated iniTialization

gii2stl

Python script to convert GIfTI surface files to STL

hcp-mmp1

mccqrnn_docker

mri_guide

This provides tutorials and scripts to help with MRI data processing and analyses

mrtrix3-preproc

Run the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both PA and AP dwi files are provided. It detects bvecs flipping (dwigradcheck) and update the gradient table accordingly.

neuroimaging-course

pyment-public

python_data_sim

slantbrainseg

Deep Whole Brain Segmentation Using SLANT Method

uncertainty-brain-age

Uncertainty aware brain age prediction

usc_ba_estimator