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casskit

casskit: cancer association studies toolkit

dos_abstract_book

epiclock

epigeneticregulators_mousegastrulation

Epigenetic regulator function through mouse gastrulation

fraserhead

Fraser lab slackbot for onboarding new lab members.

isa

in silico Strand Annealing

kerr_mean_field_paper_2021

mann-kendall-trend

Simple python function to run Mann-Kendall Test for Trend

manuscript-stub

mm-dev-data-explorer

openomics

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

plaac

Prion-Like Amino Acid Composition

popgen-notes

Population genetics notes

presentation-stub

public_cancer_db

pynbs

Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

pyrty

Use R snippets as python functions. Manage R dependencies separately.

ratio_corr_gammas

rck

RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes

same

Somatic mutation Association test with Measurement Errors

theprecisionlasso

implementation for the Precision Lasso

tls

Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites

xenapython

Python API for Xena Hub

yaglm

A python package for penalized generalized linear models that supports fitting and model selection for structured, adaptive and non-convex penalties.