Comments (3)
I am not sure, but now it is okay. It can generate equal amount of rxnMiriams/metMiriams with rxns/mets.
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@feiranl thanks for reporting this, could you please upload/send the model that showed this behaviour?
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@edkerk @feiranl using yeast-GEM from devel
+ RAVEN in devel
I actually don't observe this behavior. Could it be an out of date version of the model @feiranl?
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Related Issues (20)
- The meaning of output parameters of FSEOF HOT 8
- help: randomSampling with human-GEM HOT 10
- changeGeneAssoc not work if all the gene already are in the model
- bug: on Apple silicon CPU getDiamond fails HOT 4
- Failed to make blastp executable HOT 4
- fix: addRxns definition of `rev` field
- chore: update tINIT references HOT 3
- solveLP() does not work because of issue in code HOT 6
- RAVEN >= v2.7.7 getModelFromHomology generates invalid GPRs from Recon3D HOT 3
- Error: ftINIT - failed to find good enough solution within time frame HOT 14
- help: getKEGGModelForOrganism gives error when using dispEM HOT 1
- bug: RAVEN 2.8.2 checkInstallation on new install
- bug: model loaded from YAML has no c-field
- bug: soplex reported failure, even when functional
- SBO terms not exported properly to Excel format when they are within MIRIAM annotations HOT 5
- Can fast tINIT integrate data from bulk RNA-seq? HOT 8
- Unrecognized field name "compNames" with ravenCobraWrapper error
- bug: make binaries executable on Ubuntu
- bug: simplifyModel with irreversible backwards-only reactions
- Error in getModelFromHomology function HOT 3
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