Comments (5)
I think numba
is a leftover from some performance hacks @rijobro was trying - looks like it can be removed.
from sirf-exercises.
yeah, it looks like it wasn't actually being used in the notebook. It is, however, used in a few others (but not pip
installed):
- https://github.com/SyneRBI/SIRF-Exercises/blob/master/notebooks/Synergistic/de_Pierro_MAPEM.ipynb
- https://github.com/SyneRBI/SIRF-Exercises/blob/master/notebooks/Synergistic/Solutions/Dual_PET_Answer-noMotion.ipynb
- https://github.com/SyneRBI/SIRF-Exercises/blob/master/notebooks/Synergistic/Solutions/Dual_PET_Answer-wMotion.ipynb
from sirf-exercises.
Serves us right from not upgrading to Python 3. @paskino, this will have to be a priority after 2.2 (unless it's a matter of dropping in ubuntu 20.04, but that seems unlikely!)
I suggest to move the import numba
to a new cell, but commented out, saying that they can uncomment it and subsequent @jit
lines if they have python3 (and numba).
from sirf-exercises.
How much of a speedup does it really give in those notebooks? May just be better to leave it out...
from sirf-exercises.
Comment from a notebook says
Using jit gets computation time from 90 secs to 2!
So I'm inclined to comment it out rather than delete.
from sirf-exercises.
Related Issues (20)
- some SPECT notebooks use ~/SIRF-Exercises HOT 1
- matplotlib HOT 8
- download_data.sh on the STFC cloud HOT 2
- 4_setup_training notebook deep learning HOT 4
- about the normalization of NEMA data HOT 2
- SPECT Y90 data HOT 8
- ASTRA not installed on the VM (and docker probably) so Introductory/acquisition_model_mr_pet_ct.ipynb fails
- MissingIDFieldWarning HOT 7
- gradient descent notebook HOT 8
- BrainWeb notebook writes data in wrong path
- HKEM notebook run-time HOT 1
- create requirements.yml HOT 1
- gaussian_filter deprecation warning
- Dual_PET_Answer notebooks don't have update_bowsher_weights HOT 1
- Update x_init to initial when calling FISTA in SIRF-Exercises/notebooks/MR HOT 1
- environment.yml should list pip HOT 2
- cil should be added to environment.yml HOT 4
- Problem with normalization header in /notebooks/PET/reconstruct_measured_data.ipynb HOT 6
- need .gitattributes
- Video Link For OOP not working HOT 2
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from sirf-exercises.