sycamoreleaf Goto Github PK

36days36algorithms

Will be releasing an unpublished encryption algorithm each day for the next 36 days.

about

Information & contacts

aggregator

Kim Lab - Aggregate per-position statistics over genomic regions

analyze_dwells

Analysis of dwell-time data

anki

Anki for desktop computers

chris_ssg

Very, very, very, very lightweight static site generator

conda-docs

Conda documentation

cpython

The Python programming language

dwellx

Extract per-read per-position dwell-times from Oxford Nanopore fast5 files

extract_dwells_1

For Kim Lab use only. Notes and code from attempt to extract dwell times from fast5s.

extract_dwells_2

Honestly I just uploaded this so it would show up on my GitHub activity graph

extract_dwells_3

Intended for Kim lab use only.

f_and_d_values

For Kim Lab use - script to compute f- and d-values from wide per-read-stats CSV

fishers_method_and_signal_width

(For Kim Lab use only) Demo of how Fisher's method affects width of p-value signals

hangman

I'm a hax0r

ml_8078

Machine-learning to classify m6A modifications at nucleotide 8078 of the HIV genome from Oxford Nanopore sequencing data

prs_converter

Convert Tombo per-read statistics files to CSV

prs_ecdf_viewer

prsconv2

Improved tool to convert Tombo per-read statistics files into CSV files

prsconv3

Convert Tombo files to CSV

pval_ml

Kim lab: Machine learning to identify m6A-methylated virus nucleotides.

pval_trimmer

For Kim Lab use - Trim the ends of read in per-read stats CSV files

resamp3

Pipeline to run Tombo with a subsample of control reads

ronnienicksanderchris

Machine learning model to identify twitter bots

spark

Apache Spark - A unified analytics engine for large-scale data processing

spring-2023-notes

Notes for classes taken at UCSB Spring quarter 2023

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

tombo_tools

Assorted tools for working with fast5 files

xv6-riscv

Xv6 for RISC-V