swarris Goto Github PK

followers: 12.0 following: 6.0 repos: 15.0 gists: 0.0

Type: User

swarris's Projects

2023-04-20-long-reads

Long reads workshop by Wageningen University & Research

biograph

Set of tools to store, query and visualize genome annotations with graph databases

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

genomicsworkshop

2-day workshop on long read genome assembly

longread-assemblies

makerannotation

Snakemake pipeline for the MAKER genome annotation tool

open3d

Open3D: A Modern Library for 3D Data Processing

opensilex

Opensilex is an information system for scientific research data management

pacasus

Correction of palindromes in long reads from PacBio and Nanopore

paswas

Parallel Smith-Waterman Alignment Software

pypaswas

Program for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.

sendo

Scripts for the Synchytrium endobioticum genome paper

simulitis

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