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swarris's Projects

biograph icon biograph

Set of tools to store, query and visualize genome annotations with graph databases

dbg2olc icon dbg2olc

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

open3d icon open3d

Open3D: A Modern Library for 3D Data Processing

opensilex icon opensilex

Opensilex is an information system for scientific research data management

pacasus icon pacasus

Correction of palindromes in long reads from PacBio and Nanopore

paswas icon paswas

Parallel Smith-Waterman Alignment Software

pypaswas icon pypaswas

Program for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.

sendo icon sendo

Scripts for the Synchytrium endobioticum genome paper

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