Comments (7)
Hi, I have updated the code to fix this error. Please let me know if you still have the issue:
from arcsv.
from arcsv.
Hi Enzo,
There is in fact a .vcf file output by the arcsv call
command. The .tab file is easier to work with for complex structural variation containing multiple breakpoints, as the entire complex SV (set of linked breakpoints) is present in a single line, rather than one line per breakpoint as in VCF.
from arcsv.
from arcsv.
Ah, my apologies, you're right that filter-merge
does not support VCF output. I'll note this as a possible future improvement. You should be able to accomplish the same using the individual .vcf files and bcftools concat
and bcftools filter
: https://samtools.github.io/bcftools/bcftools.html
from arcsv.
from arcsv.
from arcsv.
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from arcsv.