I have tested some basic code from the tutorial with the MIMIC-4 dataset. But the proc

I changed the parallel_apply to normal <code class="n

The version in requires.txt file on the develop branch. <span clas

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Entering deadlock when parsing prescriptions about pyhealth HOT 9 CLOSED

sunlabuiuc commented on May 22, 2024

Entering deadlock when parsing prescriptions

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Comments (9)

louis-she commented on May 22, 2024 1

I changed the parallel_apply to normal apply and everything went well.

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ycq091044 commented on May 22, 2024 1

sounds good, it might be the issue in the new pandas version then... But the MIMIC-IV data is large and parallel_apply might be necessary to accelerate the process. I will dig into it.

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ycq091044 commented on May 22, 2024

Interesting, it tests fine on our end. We will investigate into it in the next few days.

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BPDanek commented on May 22, 2024

which version of pandas do you use?

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louis-she commented on May 22, 2024

pandas==1.5.3
pandarallel==1.6.5

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louis-she commented on May 22, 2024

actually, I think it's an issue of pandarallel, I think we can close the issue here.

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jiangxinke commented on May 22, 2024

What version of pandarallel is needed?

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BPDanek commented on May 22, 2024

The version in requires.txt file on the develop branch.

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jiangxinke commented on May 22, 2024

@BPDanek , thanks, I have changed to the specific version of pandas and pandarallel. But the code is still in deadlock: