sunbeam-labs Goto Github PK
Name: Sunbeam Labs
Type: Organization
Bio: Code related to the Sunbeam whole-genome shotgun sequencing pipeline
Sunbeam Labs's Projects
sbx_anvio
sbx_assembly
Sunbeam extension for assembly (megahit) and annotation (prodigal)
sbx_coassembly
Sunbeam extension to co-assemble metagenomic reads using Megahit
sbx_contigs
sbx_demic
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads
sbx_fungi_mapping
sbx_gene_clusters
sbx_genome_assembly
sbx_igv
IGV extension for Sunbeam
sbx_kaiju
Kaiju metagenomics classifier for Sunbeam
sbx_kraken
Extension for running kraken2 and kraken2-biom
sbx_krakenhll
sbx_mapping
Extension to map reads against a set of reference genomes
sbx_metaphlan
Sunbeam extension for running MetaPhlAn
sbx_metaphlan4
Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)
sbx_metaspades_example
Example Sunbeam extension for assembly with metaspades.
sbx_phase_finder
sbx_report
Generates a final report, with figures, from a Sunbeam run
sbx_shortbred
sbx_silva18s
sbx_spades
sbx_subsample
Sunbeam extension to subsample reads after quality control
sbx_template
Template for Sunbeam extensions.
sbx_test_action
GH Action for testing sunbeam extensions
sbx_virus_id
sbx_vsearch
Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)
sunbeam
A robust, extensible metagenomics pipeline
sunbeam-labs.github.io
sunbeam-poster
Poster for ASM NGS 2018
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