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Hi there 👋

I am research engineer at the Pasteur Institut of Paris working on Bio-Image Analysis. With a computer science background and a Ph.D in Image Processing and Analysis, I am interested in the development of new tools and methods for the analysis and quantification of biological images, especially in the field of developmental biology and cell biology.

Github Stats

Open Source Projects

I am currently participating in the development of the clEsperanto project, a collection of image processing algorithms for GPU-accelerated bio-image analysis. Particular focus is put on the development of a multi-language and a user-friendly API.

Repository Description Traffic Contributions
CLIc_prototype A collection of GPU-accelerated image processing algorithms for bio-image analysis in C++ GitHub starsGitHub forks contribution
pyclesperanto Python bindings for the CLIc library GitHub starsGitHub forks contribution
clesperantoj_prototype Java bidings for the CLIc library GitHub starsGitHub forks contribution
clesperanto kernels OpenCL kernels for image processing GitHub starsGitHub forks contribution

Contacts & social networks

I am active on the forum of the image.sc which gather the community of bio-image analysts. Do not hesitate to pass by if you need help or if you want to discuss about image processing applied to biology.

Otherwise I am also active on the follwing social network: Twitter mastodon github ORCID

Stephane Rigaud's Projects

assistant icon assistant

A user interface for GPU-accelerated image processing using CLIJ2

ci_helloworld icon ci_helloworld

A simple example of how to setup a complete CI environment for C and C++

epiproj icon epiproj

ITK based multiscale projection filters and software to project 3D volume epithelium in 2D

itkconvexhull2dfilters icon itkconvexhull2dfilters

ITK based filters to compute 2D convex hull from binary or label image using the quick-hull algorithm.

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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