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STOmics's Projects

batcheval icon batcheval

BatchEval: An Exquisite Workflow for Evaluating Batch Effects in Data Integration

cellbin icon cellbin

Tools for generating single-cell gene expression data

eags icon eags

EAGS:efficient and adaptive Gaussian smoothing

spatialid icon spatialid

A cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

spatialign icon spatialign

Spatially Resolved Transcriptomics Integration Algorithm

st-gears icon st-gears

A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors

stcellbin icon stcellbin

Enhanced application on generating single-cell gene expression profile for high-resolution spatial transcriptomics.

stereommv1 icon stereommv1

StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an attention mechanism.

stereopy icon stereopy

A toolkit of spatial transcriptomic analysis.

stereotyping icon stereotyping

Model Training Workflow for Determining Cell Type Based on ST and IF

udi icon udi

UMI Defined Cell Segmentation Tool UDi-CST

vns icon vns

A Novel Variable Neighborhood Search Approach for Cell Clustering Using Gene Expression and Spatial Coordinates

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