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bioconda-recipes

Conda recipes for the bioconda channel.

ceerspower

Java GUI analysis tool

cell-differentiation-classifier

A logistic regression workflow that takes RNA-seq data to assess the differentiation potential of a cell line

closecall

Pipeline for processing Proximity RNA-seq datasets

combinations

compter

An application to graphically summarise kmer enrichment in a set of sequences

convhicup

Scripts to convert HiCUP output for use by other software (e.g. homer)

cut_and_run

These are collected scripts that constitute a pipeline to analyse Cut and Run / Cut and Tag datasets. The scripts have been taken from the tutorial put together by Ye Zheng, Kami Ahmad and Steven Henikoff. The scripts have been modified to facilitate processing.

data-analysis-with-python-course

This course is intended for people who want to learn how to analyse data programmatically

data_tracks

docker-lamp

A simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image

fastq-screen

Detecting contamination in NGS data and multi-species analysis

goldmine

Identify the genome of origin of FASTQ sequence reads

hicup

Hi-C data processing pipeline

just-the-docs

A modern, high customizable, responsive Jekyll theme for documention with built-in search.

labrador

A web based tool to manage and automate the processing of publicly available datasets.

lava

zero-interpolation approach to performing pairwise differential abundance analysis on large, multi-condition, multi-replicate proteomics datasets that are spattered with missing values

lifesciencestrainingdatasets

A collection of datasets and accompanying scripts for learning how to analyse data

lmb-nextflow

Configuration files and other information regarding the Nextflow setup at the LMB

nextflow_pipelines

The set of NGS processing pipelines used at Babraham

running_ngs_pipelines_course

Course detailing how to run NGS bioinformatics pipelines using Nextflow on the LMB compute cluster

seqmonk

SeqMonk NGS visualisation and analysis tool

structure-indentity

The project uses snRNAseq and Molecular Cartography to investigate the relation between morphology and molecular identity in brain organoids.

washu-pipe

Pipeline to prepare Hi-C data for the WashU Epigenome Browser