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I'm a Senior Programming Analyst in the Institute for Genomics and Evolutionary Medicine at Temple University.

My primary interest is to build systems and applications that assist in both accelerating research in bioinformatics and have direct practical application in public health. This includes, but is not limited to, the use of tools, languages, and frameworks like Node.js, React, C++, Python, and numerous bioinformatics software as part of RNA-Seq pipelines, phylogenetic analysis, and user-friendly web applications.

In addition, I am responsible for the configuration and maintenance of high performance computing environments in datacenters at the San Diego Supercomputing Center and Temple University.

Steven Weaver's Projects

augur icon augur

Pipeline components for real-time virus analysis

auspice icon auspice

Web app for visualizing pathogen evolution

bcell-phylo icon bcell-phylo

Take antibody sequence data from JSON to FASTA format

bioext icon bioext

A few handy bioinformatics tools not already within BioPython

busted icon busted

Scripts, processing modules and test data for BUSTED

comet-prot icon comet-prot

Book chapter for upcoming Springer book Computational Methods in Protein Evolution

covfefe-app icon covfefe-app

ＣＯＶＦＥＦＥ　•　コヴフェフェ　•　ＡＰＰＬＩＣＡＴＩＯＮ

datamonkey-js icon datamonkey-js

Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

decimal-date icon decimal-date

Accepts a date in any format and returns a decimal date like seen in BEAST or the lubridate R package

edlib icon edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

fauna icon fauna

RethinkDB database to support real-time virus analysis

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