Name: Stephen Otieno
Type: User
Company: Jomo Kenyatta University of Agriculture and Technology
Bio: Medical Laboratory Scientist | Bioinformatics Enthusiast | Molecular Biology and Bioinformatics masters student
Twitter: stephen_o_ouma
Location: Nairobi- Kenya
Blog: about.me/stephenotieno
Stephen Otieno 's Projects
Machine learning fundamentals lesson in interactive notebooks
This repository includes the code that I used for my opinion paper: 'The Rise and Fall of Machine Learning Methods in Biomedical Research'
Config files for my GitHub profile.
Fork this repository and make changes to the README
Planning repository for Genomics Hackathon in Vancouver
Project Organization and Management for Genomics
Lecture workspace for the MSc Bioinformatics at Pwani University
Repository for Programming Assignment 2 for R Programming on Coursera
Lecture resources for Python for Bioinformatics EANBiT course.
Updated materials for MSc Bioinformatics for Pwani University
Python Data Science Handbook: full text in Jupyter Notebooks
Data Analysis and Visualization in R for Ecologists
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
The Unix Shell
:snake: Snakefiles for common RNA-seq data analysis workflows.
TFFM framework
A collection of Galaxy-related training material
Read trimming tool for Illumina NGS data.
Result files generated by nf-core viralrecon pipeline on Nextflow for MOOC FutureLearn
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).