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Stephen "Christian" Kocsis's Projects

lfomics icon lfomics

Integrate multiomic datasets using autoencoder-based feature extraction and perform GSEApy enrichr functional enrichment analysis on top features.

nextflow-pipelines icon nextflow-pipelines

Nextflow pipelines for various bioinformatics, machine learning, and statistical analyses.

normseq icon normseq

Easy to use RNA-sequencing data normalization tool built in C++ for use in Python. Can handle many popular normalization techniques.

pylit icon pylit

Conduct a mass literature review using Python by inputting a key word or phrase of interest. This Python script can be used to query the PubMed database using Biopython. Input user email, how many papers you would like to be returned per query, and what date range you would like to have papers returned from.

wgcna-turorial icon wgcna-turorial

This is a tutorial of the weighted gene correlation network analysis (WGCNA) package from Dept. of Human Genetics, UC Los Angeles.

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