Comments (2)
KatharinaHoff
commented on August 12, 2024
Here's what I think is the full list of software requirements:
- BRAKER (container integrated)
- RepeatModeler2/RepeatMasker: docker://dfam/tetools:latest (we may not want to use latest, maybe fix a version; I have tested this container)
- BUSCO: docker://quay.io/biocontainers/busco:latest (see above, I have not tested this container)
- VARUS + OMArk need to be in a novel container. I will prepare this.
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KatharinaHoff
commented on August 12, 2024
I prepared a container for testing that should have both BRAKER (incl ETP) and OMArk: https://hub.docker.com/r/katharinahoff/bioinformatics-notebook If you find that it works for these tools, you can remove the BRAKER container. Still working on other containers.
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