function to read in terrestrial data about bwgtools HOT 13 CLOSED

there is no sheet called "bromeliad.terrestrial" when I use combine_tab??

from bwgtools.

@DEZERALDOlivier were you getting errors like this?

Error in match.arg(sheetname, c("leaf.waterdepths", "bromeliad.physical",  : 
  'arg' should be one of “leaf.waterdepths”, “bromeliad.physical”, “bromeliad.final.inverts”, “site.info”, “site.weather”, “bromeliad.initial.inverts”

Because I had a similar issue when i checked! I fixed it by reinstalling the package.
try running devtools::install_github() again and see if it works!

from bwgtools.

right and still not working despite reinstalling the package!!!

from bwgtools.

another thing, R cannot find the function: site.info_read()

from bwgtools.

when I try: devtools::install_github() it says Error in lapply(repo,.......) argument repo is missing, with no default

from bwgtools.

Ok final comment but not least, I am actually playing around with the bwgtools and I see several ways to improve the use of this package. I put myself in the place of someone who wants to use it for analyses and my first impression is: where could I find the information I need? You have done such an amazing job at compiling all this information so I think the content is there but it lacks structure and simplicity. We could discuss this sometime, let me know!

from bwgtools.

uh-oh! these are problems that I want to be very careful about.
Would you please restart R (start with an empty workspace) and repeat the entire process of downloading, loading and running the package:

library(devtools)
install_github("Srivastavalab/bwgtools")
library(bwgtools)
terr <- combine_tab(c("Cardoso", "French_Guiana", "Colombia",
                      "Macae", "PuertoRico","CostaRica"),
                    sheetname = "bromeliad.terrestrial")

Then, if there is still an error, would you please run sessionInfo() and send me the result? You can either paste it here or email me, as you like

from bwgtools.

re: documentation, let us make a separate issue for just that.

from bwgtools.

🚀 M @DEZERALDOlivier, nous avons encore un problème?

from bwgtools.

Hi Andrew,

I am confused it is stil not working could we skype again sometime?

from bwgtools.

zut alors! yes, are you free today

from bwgtools.

yes whenever you want!

from bwgtools.

sessionInfo()

R version 3.1.2 (2014-10-31)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=French_France.1252
[2] LC_CTYPE=French_France.1252
[3] LC_MONETARY=French_France.1252
[4] LC_NUMERIC=C
[5] LC_TIME=French_France.1252

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

other attached packages:
[1] knitr_1.10.5 dplyr_0.4.1 readxl_0.1.0
[4] rdrop2_0.6 bwgtools_0.1 devtools_1.8.0

loaded via a namespace (and not attached):
[1] assertthat_0.1 bitops_1.0-6 DBI_0.3.1
[4] digest_0.6.8 git2r_0.10.1 httr_0.6.1
[7] jsonlite_0.9.16 lazyeval_0.1.10 magrittr_1.5
[10] memoise_0.2.1 parallel_3.1.2 R6_2.0.1
[13] Rcpp_0.11.6 RCurl_1.95-4.6 rstudio_0.98.1091
[16] rstudioapi_0.3.1 rversions_1.0.0 stringi_0.4-1
[19] stringr_1.0.0 tools_3.1.2 XML_3.98-1.1

from bwgtools.