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Name: Sriram Srikant

Type: User

Company: Dept. of Biology, MIT

Bio: Post-doctoral scientist in the Laub Lab, Dept of Biology, MIT. Ph.D from Gaudet Lab and Murray Lab, Dept of MCB, Harvard.

Twitter: sriram_srikant

Location: Cambridge, MA

Sriram Srikant's Projects

2020-febs_abc-evolution icon 2020-febs_abc-evolution

Collection of files and Jupyter lab notebooks written to extract ABC protein domains from proteomes. Performed for FEBS review.

2022_t4-toxin-evo icon 2022_t4-toxin-evo

This is the code-base used in the analysis of the T4 experimental evolution to overcome toxIN. Submitted to support manuscript being prepared.

abc-selectivity icon abc-selectivity

These are iPython notebooks used for analysis in my 2019 ABC-selectivity paper.

medusa icon medusa

A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

od_growth_finder icon od_growth_finder

To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.

pheromonefinder icon pheromonefinder

Code-base to identify fungal pheromones from genome sequences. Written for publication being prepared from the Murray Lab

seqplay icon seqplay

This is a set of scripts that help in analysing sequences of DNA / Protein and parse them for various uses.

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