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3t_mri_harmonisation

Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".

abcd_visual_parser

baby-xtract

Code and data for "XTRACTing Connectivity: Understanding brain diversity across ontogeny and phylogeny within a single common space"

baby_xtract_protocols

brc_pipeline

The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.

brightmind_pipeline

Procesing pipeline of BRIGhTMIND trial

brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

bwas_ipf

Brain-Wide Association Study (BWAS) to find the association between brain imaging-derived phenotypes and idiopathic pulmonary fibrosis genetic risk

cmore_pipeline

Analysis pipeline for CMORE data

conilab

Computational Neuroimaging Lab Website

cudimot

CUDA Diffusion Modelling Toolbox

deltab

Implementation of brain age prediction from Smith et al 2019

demistifi_scripts

Processing scripts for DEMISTIFI

edden

fdt

fproc

Base for simple processing pipelines

fsl_sub_plugin_slurm

fsort

File sorter for pipeline preprocessing

migtools

Scripts to help handle MIG partitions of NVIDIA GPUs

mrs_mri_libs

Contains libraries for reading, writing and analysing Magnetic Resonance Spectroscopy and Imaging (MRS & MRI) data.

nda_data_tools

Tools for querying and downloading NDA data (for HCP and ABCD data sets)

nfact

Non-negative matrix Factorisation of Tractography data

on-harmony_ukbb_pipeline

Cross-scanner version of UK-Biobank Pipeline (v1)

ontogeny_phylogeny_mapping

Code and data for Sci. Adv manuscript and neonatal tractography (baby-XTRACT) protocols and atlases

parkinsons_pipeline

pso_code

Particle Swarm Optimisation code to fit CEST spectra

rodent_anat

Anatomical pipeline for rodent MRI based on fsl_anat interface

server-scripts

Useful scripts installed on workstations/compute servers

trkvis

Simple tractography visualisation tool

usefultools

Useful tools for public sharing