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biomass_composition

Estimation of biomass composition

biomass_pertubation

Java script to perform wild-type simulation with a perturbation of a given coefficient of a biomass component

biomass_task-_data_analysis

Scripts of data analysis of Origin and impact of biomass composition in genome-scale models predictions – SysBio2018 - Advanced Lecture Course on Systems Biology 2018, Innsbruck, Austria, 28 February – 6 March, 2018

community_optflux

Plug-in to originate a community model from single organisms existent models

designoptimizationmicrobialcommunities

Supplementary Material for PhD Thesis - Design and Optimization of Microbial Communities

framed

framed: a metabolic modeling package for python

ggbiplot

A biplot based on ggplot2

minimal_medium_community_analysis

Scripts of analysis of minimal medium composition on single organisms and communities of Inferring optimal minimal medium on genome-scale metabolic models using evolutionary algorithms. – Metabolic Pathway Analysis Conference, Riga, Latvia, 12-16 August, 2019.

miyeastk_data_analysis

Scripts of data analysis of *MIYeastK: The Metabolic Integrated Yeast Knowledgebase – SPB2016 - XIX National Congress of Biochemistry, Guimarães, Portugal, 8-10 December, 2016*

phenotypicforest

R package that generates plots representing the association of SNPs with a list of phenotypes.

simulationmethodscommunities

Genome-scale metabolic models and all scripts for the simulation of the nitrification process catalyzed by Nitrosomonas europaea and Nitrobacter vulgaris

workshop-java-s2