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3utrmutationalmpra

analyzeriboseqdata

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioc2015introduction

Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, Wa

bioc2017_tcga_gtex_bof

This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx

bioconductor20yearsslides

Carousel of xaringan slides to celebrate 20 years of the Bioconductor project.

biocutils

brainumap

cut-and-run

datasciencecoursera

datasharing

The Leek group guide to data sharing

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

germanosprostatescrnaseq

gettingcleaningdata

This repository contains an assignment for the coursera course Getting And Cleaning Data

gsc_scrnaseq_kat5paper

janaarid1abladdercancer

This repository contains code for our upcoming paper "Dissecting the interface between ARID1A and mRNA translation in bladder cancer" from the [Hsieh Lab](https://research.fredhutch.org/hsieh/en.html) at Fred Hutch Cancer Center.

labs

Scripts for PH525x: Data Analysis for Genomics

lim-5utr-paper

This repository contains code for our 5' utr mutation analysis paper

mlseqanalysis

Sequence Analysis using Machine Learning Algorithms

palantir

Single cell trajectory detection

pattwell_transcript_sci-rna-seq3

pattwelletal2020

This repository contains R scripts used for our publication "A kinase-deficient NTRK2 splice variant predominates in glioma and amplifies several oncogenic signaling pathways"

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

sonalirepo

szulzewskyyap1maml2paper

uncertaintyrna

This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"